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Europe style for Intestinal Microbiome - Metagenomics (NGS) – Biomarker Detail:
Transcipt identification
Raw data processing
Metagenome assembly
Metagenome component analysis
PCA
Function annotation
Alpha diversity analysis -Gene level
Beta diversity on functional genes
PCoA
Non-redundant gene set
NMDS
UPGMA
Anosim
permanova
RDA/CCA
Intergroup differential analysis
Alpha diversity analysis -Species level:
Random forest
Lefse
Beta diversity analysis on species
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