Indawo yokuqhudelana | Ubukhulu bekholabhulali | Isivuno sedatha ye-Theoretical (iseli ngalinye) | Ukunemba kwesisekelo esisodwa | Izinja |
I-nanopore | I-8KB, 10KB, 20KB, Ultralong, CDNA-PCR | I-70-90GB / iseli | 85-92% | I-SV Calling, de Novo, Ukulandelana Okugcwele Okugcwele, I-ISO-SEQ, Isichasiselo seGene, Ukutholwa Kwe-DNA methylation |
● Isikhathi esingaphezu kweminyaka engu-5 ngokuhlangenwe nakho kweminyaka engu-5 kwiplatifomu yokulandelana kwePacbio ngezinkulungwane zamaphrojekthi avaliwe ngezinhlobo ezahlukahlukene.
● I-BMKGENE ingumlingani osemthethweni we-Oxford Nanopore, enesitifiketi se-RNA / DNA Certification.
● Kunamamodeli ajwayelekile we-sequoncers anemishini ephelele nokulandelana ngokwanele kokufakelwa.
● Kususelwa epulatifomu ye-nanopore, izilwane ezingaphezu kwezingu-10 ezicwaningayo zesilwane kanye nezitshalo ze-denovo zishicilelwe kumaphephabhuku adume kakhulu emhlabeni jikelele.
Uhlobo lwesampula | Inani | I-Conf Consection (Qubit ®) | Ukuvimbanisa | Ubumsulwa | Abanye |
I-genomic DNA | Kuya ngesidingo sedatha | ≥20ng / μl | ≥15μL | I-OD260 / 280 = 1.7-2.2; I-OD260 / 2300≥1.5; Sula inani eliphakeme ngo-260 nm, azikho izinto zokungcola | Ukuhlushwa kudinga ukukalwa nguQubit noQubit / Nanopore ≤ 2 |
Ingqikithi ye-RNA | ≥1.2μg | ≥100μg / μl | ≥15μL | I-OD260 / 280 = 1.7-2.5; I-OD260 / 230 = 0.5-2.5; Azikho izinto | I-Rin Face ≥7.5 |
Ukuhlolwa kwekhwalithi yedatha yesampula ye-DNA
Ithebula 1. Izibalo ngemininingwane ehlanzekile.
IBMKID | rawseqnum | i-rawsumbase | hlanza | indawo edliwayo | I-Cleann500len | I-CleanN90len | I-CleanmeAnlen | I-Cleanmaxlen | indawo yokuhlanzaka |
I-DNA_BMK01 | 1,218,239 | 26.37 | 1,121,736 | 25.90 | 28,014 | 15,764 | 23,090 | 143,181 | 9 |
Ukuhlolwa kwekhwalithi yedatha yesampula ye-RNA
Ithebula 1. Izibalo ngemininingwane ehlanzekile.
Igama lefayela | Iklayenti | Ukufunda | IBasenum | UN50 | Ukuhlenga | Maxhwang | Kusho ukuthi |
Rna_bmk001 | C2 | 8,947,708 | 4,047,230,083 | 398 | 452 | 129,227 | Q12 |
Umdwebo 1. Funda ukusatshalaliswa kobude
Umdwebo 2. Ukusatshalaliswa kwesikolo sekhwalithi yedatha ehlanzekile
Umdwebo 3. Ubude kanye nokusatshalaliswa kwesikolo sekhwalithi yedatha ehlanzekile