● Kusetshenziswa ama-probe akhethekile ukuqeda i-ribosomal cDNA.
● Ukwakhiwa komtapo wolwazi oqondene ne-strand.
● Umsebenzi owodwa wokuthola idatha ye-mRNA, i-lncRNA kanye ne-circRNA ngasikhathi sinye.
● Ukulawulwa Kwekhwalithi Okuqinile: Sisebenzisa amaphuzu okulawula ayisisekelo kuzo zonke izigaba, kusukela ekulungiseleleni amasampula kanye nomtapo wolwazi kuya ekulandeleni nasekubhaleni ulwazi nge-bioinformatics. Lokhu kuqapha ngokucophelela kuqinisekisa ukulethwa kwemiphumela esezingeni eliphezulu njalo.
● Ukusekelwa Ngemva Kokuthengisa: Ukuzibophezela kwethu kudlulela ngale kokuqedwa kwephrojekthi ngesikhathi sesevisi yezinyanga ezintathu ngemuva kokuthengisa. Phakathi nalesi sikhathi, sinikeza ukulandelwa kwephrojekthi, usizo lokuxazulula izinkinga, kanye nezikhathi zemibuzo nezimpendulo ukuze kuxazululwe noma yimiphi imibuzo ehlobene nemiphumela.
| Umtapo Wolwazi | Ipulatifomu | Idatha enconyiwe | Idatha ye-QC |
| umtapo wolwazi oqondisiwe we-rRNA onciphile | I-Illumina PE150 | 10-16 Gb | Q30≥85% |
Ama-Nucleotide:
| Inani (ng) | Ivolumu (μL) |
| 40 | 20 |
Izicubu:
I-Exosome: 100 μL; 40 μg; >10^9 izinhlayiya/mL
I-Serum/plasma: 5 mL
Isithako esingaphezu kwesijwayelekile se-cell culture: 100 mL
Umchamo: 100 mL
Amathe: 15 mL
Ukuphuma kwempumulo: 15 mL
Uketshezi lwe-cerebrospinal: 15 mL
Uketshezi lwe-Amniotic: 50 mL
Isidoda: 5 mL
Inyongo: 5 mL
Ama-Ascites: 50 mL
Ubisi: 15 mL
Uketshezi lwe-Follicular: 15 mL
I-supernatant yendle: 50 mL
Isithako esikhulu se-microbial culture: 100 mL
Izicubu zezilwane: 3 g
Izicubu zesitshalo: 1 g
Isitsha: ishubhu le-centrifuge elingu-2 mL (Akukhuthazwa ukusebenzisa i-tin foil)
Ukulebula kwesampula: Iqembu + ukukopisha isib. A1, A2, A3; B1, B2, B3.
Ukuthunyelwa:
1. Iqhwa elomile: Amasampula kudingeka apakishwe ezikhwameni bese egqitshwa eqhweni elomile.
2. Amashubhu e-RNAstable: Amasampula e-RNA angomiswa eshubhu lokuzinzisa i-RNA (isb. i-RNAstable®) bese ethunyelwa ekushiseni kwegumbi.
I-Bioinformatics
Ukubikezela kwe-circrRNA: ukusatshalaliswa kwe-chromosome
Ama-circrRNA ahlukaniswe ngokuhlukile – i-volcano plot
Ama-circrRNA ahlukaniswe ngokuhlukile - ukuhlanganiswa kwe-hierarchical
Ukucebisa okusebenzayo kwezakhi zofuzo ze-circRNA
Ukuhlaziywa kwe-Differential Gene Expression (DEGs)
Ukulinganiswa kokubonakaliswa kwe-lncRNA - ukuhlanganiswa
Ukucebisa izakhi zofuzo ze-lncRNA
Ukuhlaziywa kwesimo se-mRNA kanye ne-lncRNA esihlangene – Isakhiwo se-Circos (isiyingi esiphakathi siyi-mRNA kanti i-inner cicrlce iyi-lncRNA)