GENOME EVOLUTION, PANGENOME
Pan-genome ni iki?
Ibimenyetso bifatika byerekana ko itandukaniro riri hagati yubwoko butandukanye bwubwoko bushobora kuba bunini.Ikirangantego kimwe kiri kure bihagije kugirango ubone ishusho yose yamakuru yubwoko bumwe.Intego yubushakashatsi bwa Pan-genome nugushaka ibisobanuro birambuye bya genomique yubwoko no gutandukanya isano iri hagati yimiterere na code ya genetique ukoresheje genome de novo ikoranya amoko menshi, bigatuma ubucukuzi bwimbitse kandi bwagutse bwo gutandukana.
Inzira yo Kwiga Pan-genome
Igishushanyo 1 Inzira zimpapuro zubushakashatsi zasohotse kuri Pan-genome.
Icyitonderwa: Igishushanyo cyerekana ibisubizo byo gufata "pan-genome" nkijambo ryibanze ryo gushakisha imitwe yingingo zasohotse mubinyamakuru bya seriveri, Akagari na siyanse.
a.Gusoma kuva kuburugero rwinshi bihujwe kubisobanuro kandi bidahujwe bikusanyirizwa hamwe.Mugushyiramo ibishya bishya kurutonde rwumwimerere, urutonde rwa pangenome rushobora kubakwa.Uturere tudashobora kugenwa hashingiwe ku gushushanya ibyasomwe byose kuri pangenome.
b.De novo guteranya genome yibintu byinshi byemerera uburyo bwo guhuza genome zose kugirango tumenye uturere twa genomic.
c.Igishushanyo cya pan-genome kirashobora kubakwa uhereye kuri genome yose cyangwa hamwe na de novo igishushanyo mbonera, kibika neza amakuru atandukanye yakarere kateganijwe nkinzira zidasanzwe zinyuze mubishushanyo.
Nigute wubaka Pan-genome?
Igishushanyo 2 Kugereranya uburyo bwa pan-genome1
a.Gusoma kuva kuburugero rwinshi bihujwe kubisobanuro kandi bidahujwe bikusanyirizwa hamwe.Mugushyiramo ibishya bishya kurutonde rwumwimerere, urutonde rwa pangenome rushobora kubakwa.Uturere tudashobora kugenwa hashingiwe ku gushushanya ibyasomwe byose kuri pangenome.
b.De novo guteranya genome yibintu byinshi byemerera uburyo bwo guhuza genome zose kugirango tumenye uturere twa genomic.
c.Igishushanyo cya pan-genome kirashobora kubakwa uhereye kuri genome yose cyangwa hamwe na de novo igishushanyo mbonera, kibika neza amakuru atandukanye yakarere kateganijwe nkinzira zidasanzwe zinyuze mubishushanyo.
Vuba aha Pan-genomes
Gufata ku ngufu pan-genomes2
● Inyanya pan-genomes 3
● Umuceri Pan -genome4
Sun Sunflower Pan-genome5
● Soya Pan-genome 6
Umuceri Pan-genome7
● Barley Pan-genome8
● Ingano Pan-genome9
● Amasaka Pan-genome10
Y Phytoplankton Pan-genome11
Reba
1. Bayer PE, Golicz AA, Scheben A, Batley J, Edwards D. Ibimera pan-genome nibyo bishya.Ibimera.2020; 6 (8): 914-920.doi: 10.1038 / s41477-020-0733-0
2. Indirimbo JM, Guan Z, Hu J, n'abandi.Imirongo umunani yo mu rwego rwo hejuru yerekana pan-genome yubatswe hamwe na ecotype itandukanya Brassica napus.Ibimera.2020; 6 (1): 34-45.doi: 10.1038 / s41477-019-0577-7
3. Gao L, Gonda I, Izuba H, n'abandi.Inyanya pan-genome ivumbura genes nshya na allele idasanzwe igenga uburyohe bwimbuto.Nat Genet.2019; 51 (6): 1044-1051.doi: 10.1038 / s41588-019-0410-2
4. Zhao Q, Feng Q, Lu H, n'abandi.Isesengura rya pan-genome ryerekana urugero rwimiterere ya genomic mumuceri uhingwa nishyamba [gukosora byatangajwe bigaragara muri Nat Genet.2018 Kanama; 50 (8): 1196].Nat Genet.2018; 50 (2): 278-284.doi: 10.1038 / s41588-018-0041-z
5. Hübner S, Bercovich N, Todesco M, n'abandi.Isesengura ryizuba rya pan-genome ryerekana ko kuvanga byahinduye ibirimo gene no kurwanya indwara.Ibimera.2019; 5 (1): 54-62.doi: 10.1038 / s41477-018-0329-0
6. Liu Y, Du H, Li P, n'abandi.Pan-Genome ya Soya yo mu gasozi kandi ihingwa.Akagari.2020; 182 (1): 162-176.e13.doi: 10.1016 / j.cell.2020.05.023
7. Qin P, Lu H, Du H, n'abandi.Isesengura rya pan-genome ryibintu 33 byinjizwa byumuceri byerekana ubwoko butandukanye bwihishe [byatangajwe kumurongo mbere yo gucapa, 2021 Gicurasi 25].Akagari.2021; S0092-8674 (21) 00581-X.doi: 10.1016 / j.cell.2021.04.046
8. Jayakodi M, Padmarasu S, Haberer G, n'abandi.Pan-genome ya sayiri irerekana umurage uhishe wo korora mutation.Kamere.2020; 588 (7837): 284-289.doi: 10.1038 / s41586-020-2947-8
9. Walkowiak S, Gao L, Monat C, n'abandi.Ubwoko bwinshi bw'ingano bugaragaza itandukaniro ryisi yose mubworozi bugezweho.Kamere.2020; 588 (7837): 277-283.doi: 10.1038 / s41586-020-2961-x
10. Tao Y, Luo H, Xu J, n'abandi.Itandukaniro ryinshi muri pan-genome yamasaka ahingwa nishyamba [yatangajwe kumurongo mbere yo gucapa, 2021 Gicurasi 20].Ibimera.2021; 10.1038 / s41477-021-00925-x.doi: 10.1038 / s41477-021-00925-x
11. Umufana X, Qiu H, Han W, n'abandi.Phytoplankton pangenome yerekana prokaryotic ya horizontal ihererekanyabubasha ryimikorere itandukanye.Sci Umujyanama.2020; 6 (18): eaba0111.Yatangajwe 2020 Apr 29. doi: 10.1126 / sciadv.aba0111
Igihe cyo kohereza: Mutarama-04-2022