条形 isibhengezo-03

Imikhiqizo

Ukulandelana Kwe-Chromatin Immunoprecipitation (ChIP-seq)

I-Chromatin Immunoprecipitation (CHIP) iyindlela esebenzisa ama-antibodies ukuze ikhethe ngokukhethekile amaprotheni ahlanganisa i-DNA kanye nezinhloso zawo ze-genomics. Ukuhlanganiswa kwayo ne-NGS kwenza kube lula ukuqoshwa kwe-genome yonke kwezinhloso ze-DNA ezihlobene nokuguqulwa kwe-histone, izici zokubhala, kanye namanye amaprotheni ahlanganisa i-DNA. Le ndlela enamandla ivumela ukuqhathaniswa kwezindawo zokubopha kuzo zonke izinhlobo zamaseli, izicubu, noma izimo. Ukusetshenziswa kwe-ChIP-Seq kuqala ekutadisheni ukulawulwa kokubhala kanye nezindlela zokuthuthukiswa kuya ekuchazeni izindlela zesifo, okwenza kube ithuluzi elibalulekile lokuqonda izindawo zokulawulwa kokuzalwa kanye nokuthuthukisa ukuqonda kokwelapha.

Ipulatifomu: Illumina NovaSeq


Imininingwane Yesevisi

I-Bioinformatics

Imiphumela Yedemo

Izinzuzo Zesevisi

Ukuhlaziywa Okuthuthukisiwe Kwe-Bioinformatic kanye Nezichasiselo Eziphelele:Sisebenzisa izizindalwazi eziningi ukuze sichaze ngokusebenzayo izakhi zofuzo ezihlotshaniswa nezindawo zokubopha amaprotheni-DNA, sinikeze ukuqonda ngezinqubo zamaseli kanye nama-molecule ezisekela ukusebenzisana.

Usekelo Lwangemva Kokuthengisa:Ukuzibophezela kwethu kudlulela ngale kokuqedwa kwephrojekthi ngesikhathi senkonzo yezinyanga ezintathu ngemuva kokuthengisa. Phakathi nalesi sikhathi, sinikeza ukulandelwa kwephrojekthi, usizo lokuxazulula izinkinga, kanye nezikhathi ze-Q&A ukuze kuxazululwe noma yimiphi imibuzo ehlobene nemiphumela.

Okuhlangenwe nakho Okubanzi:Njengoba inerekhodi elihle lokuqeda ngempumelelo amaphrojekthi amaningi e-ChIP-Seq, inkampani yethu iletha ubuchwepheshe obungaphezu kweminyaka eyishumi etafuleni. Ithimba lethu lokuhlaziya elinekhono eliphezulu, kanye nokuqukethwe okuphelele kanye nokusekelwa kwangemva kokuthengisa, liqinisekisa impumelelo yamaphrojekthi akho.

● Ukulawulwa Kwekhwalithi Okuqinile: Sisebenzisa amaphuzu okulawula ayisisekelo kuzo zonke izigaba, kusukela ekulungiseleleni amasampula kanye nomtapo wolwazi kuya ekulandeleni nasekubhaleni ulwazi nge-bioinformatics. Lokhu kuqapha ngokucophelela kuqinisekisa ukulethwa kwemiphumela esezingeni eliphezulu njalo.

Imininingwane Yesevisi

Umtapo Wolwazi

Isu Lokulandelana

Ukukhishwa kwedatha okunconyiwe

Ikhwalithi yokulawula

I-DNA ehlanziwe ngemuva kwe-Immunoprecipitation

I-Illumina PE150

10Gb

Q30≥85%

Izidingo Zesampula

Inani eliphelele: ≥10 ng

Ukusatshalaliswa kosayizi wesiqephu: 100-750 bps

Ukugeleza Komsebenzi Wesevisi

ukulethwa kwesampula

Ukulethwa kwesampula

Ukulungiselela Umtapo Wolwazi

Ukwakhiwa komtapo wolwazi

Ukulandelana

Ukulandelana

Ukuhlaziywa kwedatha

Ukuhlaziywa kwedatha

Izinsizakalo Zangemva Kokuthengisa

Izinsizakalo zangemuva kokuthengisa


  • Okwedlule:
  • Olandelayo:

  • 图片91的副本

    Kufaka phakathi ukuhlaziywa okulandelayo:

    ● Ukulawulwa kwekhwalithi yedatha eluhlaza

    ● Ukubiza okuphezulu okusekelwe ekumepheni i-genome yokubhekisela

    ● Isichasiselo sezakhi zofuzo ezihlobene ne-peak-associated

    ● Ukuhlaziywa kwe-Motif: ukuhlonza izindawo zokubopha izinto ezibhaliwe (TFBS)

    ● Ukuhlaziywa Kwezinga Elihlukile kanye nesichasiselo

    Ukuhlolwa kokunotha eduze kwezindawo zokuqala zokubhala umbhalo (ama-TSS)

     

    Isiqephu esingu-92

     

    Ukusatshalaliswa kwe-genome kwama-CHIP peaks ku-genome yonke

    图片93

     

    Ukuhlukaniswa kwezindawo eziphakeme kakhulu

    图片94

    Ukucebisa okusebenzayo kwezakhi zofuzo ezihlobene ne-peak (KEGG)

    图片95

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