WGS (Nanopore)

Whole genome re-sequencing with Nanopore is a popular method for identifying genomic variants, particularly structural variants (SVs), which are more accurately called by long-read sequencing than by short-read sequencing. The BMKCloud TGS-WGS (Nanopore) pipeline is designed to analyze data from WGS projects with Nanopore using a high-quality, well-annotated reference genome. The analysis starts with read trimming and quality control, followed by alignment to the reference genome, SV calling and by functional annotation of SV-associated genes using multiple databases.