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Nanopore-based Full-length Transcriptome Sequencing

Nanopore sequencing distinguishes itself from other sequencing platforms, in that the nucleotides are read directly without DNA synthesis and generates long reads at tens of kilobases. This empowers direct read-out of full-length transcripts and tackling the challenges in transcriptomic studies.

√ Low sequence-specific bias

√ Full-length readout of cDNA to for gene structure studies

√ Less data required to cover same number of transcripts

√ Identification of multiple isoforms per gene

√ Expression quantification on isoform-level

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Typical Bioinformatics Pipeline

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Latest Successful Cases with Biomarker Technologies

1. Comparative analyses of full-length transcriptomes reveal Gnetum luofuense stem developmental dynamics

Journal: Frontiers in Genetics

Published: Mar. 2021

Keywords: MinION | Alternative splicing | APA | lncRNA | Differentially expressed transcripts

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2. Unidirectional movement of small RNAs from  shoots to roots in interspecific heterografts

Journal: Nature Plants

Published: Jan. 2021

Keywords: Nanopore | Illumina | full-length mobile mRNA detection

3. Full-length transcriptome analysis of asparagus roots reveals the molecular mechanism of salt tolerance induced by arbuscular mycorrhizal fungi

Journal: Environmental and Experimental Botany

Published: Jan. 2021

Keywords: MinION | Differentially expressed transcripts | Transcription factors | Alternative splicing

4. Physiological Characteristic Changes and Full-Length Transcriptome of Rose (Rosa chinensis) Roots and Leaves in Response to Drought Stress

Journal: Plant and Cell Physiology

Published: Oct. 2020

Keywords: PromethION | Differentially expressed transcripts | Functional prediction | Spliced isoforms | TF and lncRNA

5. Analysis and comprehensive comparison of PacBio and nanopore-based RNA sequencing of the Arabidopsis transcriptome

Journal: Plant Method

Published: Apr. 2020

Keywords: GridION | PromethION | PacBio Sequel | Illumina NovaSeq | Genome alignment | Transcript identification | Alternative splicing | SSR | LncRNA | Isoform quantification

News and Highlights aims at sharing the latest successful cases with Biomarker Technologies, capturing novel scientific achievements as well as prominent techniques applied during the study.


Post time: Jan-08-2022

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