T2T GENOME COETUS, GAP FREE GENOME
1stDuo Rice Genomes1
Title: Conventus et Validatio duarum Gap liberorum Reference Genomes pro Xian/indica Rice Reveals Insights into Plant Centromere Architecture
Doi:https://doi.org/10.1101/2020.12.24.424073
Posted Time: January 01, 2021.
Institutum: Universitas Agriculturalis Huazhong, China
Materiae
O. sativa xian/indicavarietates oryzae 'Zhenshan 97 (ZS97)' et 'Minghui 63 (MH63)
Sequencing strategy
NGS legit + HiFi legit + CLR legit + BioNano + Hi-C
Data:
ZS97: 8.34 Gb（~23x）HiFi legit + 48.39 Gb (~131x) CLR legit + 25 Gb(~69x) NGS + 2 BioNano Irys cellulae
MH63: 37.88 Gb (~103x) HiFi legit + 48.97 Gb (~132x) CLR legit + 28 Gb(~76x) NGS + 2 BioNano Irys cellulae
Figure 1 Duo hiatus liberorum genomes oryzae (MH63 et ZS97)
2ndMusa Genome2
Title: Telomere-ad-telomere chromosomatum hiatum Musae utens nanopore sequencing
Doi:https://doi.org/10.1101/2021.04.16.440017
Missae tempus: Die 17 Aprilis 2021 .
Institutum: Université Paris-Saclay, France
Materiae
Duplex haploidesMusa acuminataspp*malaccensis(DH-Pahang)
Sequenti consilio et notitia:
HiSeq2500 PE250 modus + MinION/ PromethION (93Gb, ~ 200X ) + Map optical (DLE-1+BspQ1)
Tabula 1 Comparatio Musae acuminatae (DH-Pahang) contionum genome
Figura 2 Architectura musae genomes comparationis
3rdPhaeodactylum tricornutum genome3
Title: Telomere-to-telomere genome conventus deP
haeodactylum tricornutum
Doi:https://doi.org/10.1101/2021.05.04.442596
Posted Time: May 04, 2021
Institutum: Universitas occidentalis, Canada
Materiae
Phaeodactylum tricornutumCollectio Culturae Algarum et Protozoae CCAP 1055/1)
Sequenti consilio et notitia:
1 Oxford Nanopore minION fluens cell + a 2×75 par-finem medium output NextSeq 550 run
Figure 3 Workflow pro telomere-ad telomere genome comitium
4thHumanum CHM13 genome4
Title:
Doi:https://doi.org/10.1101/2021.05.26.445798
Posted Time: May 27, 2021
Institute: National Institutes of Health (NIH), USA
Materia: cellula linea CHM13
Sequenti consilio et notitia:
30× PacBio consensus circularis sequentis (HiFi), 120× Oxoniensis Nanopore ultra-longus legit sequencing , 100× Illumina PCR-Free sequencia (ILMN), 70× Illumina / Arima Genomica Hi-C (Hi-C), BioNano maps opticas; et Strand-seq
Table 2 Comparison of GRCh38 et T2T-CHM13 congregationum humanarum
Reference
1.Sergey Nurk et al.Completa series genome humani.bioRxiv 2021.05.26.445798;doi:https://doi.org/10.1101/2021.05.26.445798
2.Caroline Belser et al.Telomere-ad-telomere chromosomatum hiatum Musae utens nanopore sequendo.bioRxiv 2021.04.16.440017;doi:https://doi.org/10.1101/2021.04.16.440017
3.Daniel J. Giguere et al.Telomere-to-telomere genome collectum Phaeodactylum tricornutum.bioRxiv 2021.05.04.442596;doi:https://doi.org/10.1101/2021.05.04.442596
4.Jia-Ming Song et al.Conventus et Validatio duarum Gap liberorum Reference Genomes pro Xian/indica Rice Revelat Insights in Plant Centromere Architectura.bioRxiv 202.12.24.424073;doi:https://doi.org/10.1101/2020.12.24.424073
Post tempus: Jan-06-2022