Apejọ T2T GENOME, GAP GENOME ỌFẸ
1stMeji Rice Genomes1
Akọle: Apejọ ati Afọwọsi ti Awọn Jiini Itọkasi ti ko ni aafo meji fun Xian/indica Rice Ṣafihan Awọn imọ-jinlẹ sinu Iṣẹ-ọnà ọgbin Centromere
Doi:https://doi.org/10.1101/2020.12.24.424073
Akoko ti a firanṣẹ: Oṣu Kini Ọjọ 01, Ọdun 2021.
Institute: Huazhong Agricultural University, China
Awọn ohun elo
O. sativa xian/indicaAwọn oriṣiriṣi iresi 'Zhenshan 97 (ZS97)' ati 'Minghui 63 (MH63)
Ilana titele
NGS kika + HiFi kika + CLR + BioNano + Hi-C
Data:
ZS97: 8.34 Gb (~ 23x) HiFi ka + 48.39 Gb (~ 131x) CLR kika + 25 Gb(~ 69x) NGS + 2 BioNano Irys ẹyin
MH63: 37.88 Gb (~ 103x) HiFi ka + 48.97 Gb (~ 132x) CLR kika + 28 Gb (~ 76x) NGS + 2 BioNano Irys ẹyin
Nọmba 1 Awọn jinomi ti ko ni aafo meji ti iresi (MH63 ati ZS97)
2ndOgede Genome2
Akọle: Telomere-to-telomere chromosomes ti ko ni aafo ti ogede nipa lilo ilana ilana nanopore
Doi:https://doi.org/10.1101/2021.04.16.440017
Akoko ti a firanṣẹ: Oṣu Kẹrin Ọjọ 17, Ọdun 2021.
Institute: Université Paris-Saclay, France
Awọn ohun elo
Double haploidMusa acuminatasppmalaccensis(DH-Pahang)
Ilana ilana-tẹle ati data:
Ipo HiSeq2500 PE250 + MinION/ PromethION (93Gb, ~ 200X)+ maapu opiti (DLE-1+BspQ1)
Table 1 Ifiwera ti Musa acuminata (DH-Pahang) awọn apejọ jiini
olusin 2 Musa genomes faaji lafiwe
3rdPhaeodactylum tricornutum jiini3
Title: Telomere-to-telomere genome ijọ tiP
haeodactylum tricornutum
Doi:https://doi.org/10.1101/2021.05.04.442596
Akoko ti a firanṣẹ: May 04, 2021
Institute: Western University, Canada
Awọn ohun elo
Pheodactylum tricornutum(Akojọpọ Asa ti ewe ati Protozoa CCAP 1055/1)
Ilana ilana-tẹle ati data:
1 Oxford Nanopore minION sẹẹli ṣiṣan + 2 × 75 sopọ-ipari aarin-jade NextSeq 550 ṣiṣe
Ṣe nọmba 3 Ṣiṣan iṣẹ fun apejọ genome telomere-to-telomere
4thJiini CHM13 eniyan4
Akọle: Ilana pipe ti ẹda eniyan
Doi:https://doi.org/10.1101/2021.05.26.445798
Akoko ti a firanṣẹ: May 27, 2021
Institute: National Institutes of Health (NIH), USA
Awọn ohun elo: laini sẹẹli CHM13
Ilana ilana-tẹle ati data:
30× PacBio circular consensus consensus sequencing (HiFi) , 120× Oxford Nanopore ultra-long read sequencing , 100× Illumina PCR-Free sequencing (ILMN) , 70× Illumina / Arima Genomics Hi-C (Hi-C), BioNano opitika maapu, ati Strand-seq
Tabili 2 Ifiwera ti GRCh38 ati T2T-CHM13 awọn apejọ ẹda-ara eniyan
Itọkasi
1.Sergey Nurk et al.Ọkọọkan pipe ti jiini eniyan.bioRxiv 2021.05.26.445798;doi:https://doi.org/10.1101/2021.05.26.445798
2.Caroline Belser et al.Telomere-to-telomere chromosomes ti ko ni aafo ti ogede nipa lilo ilana ilana nanopore.bioRxiv 2021.04.16.440017;doi:https://doi.org/10.1101/2021.04.16.440017
3.Daniel J. Giguere et al.Telomere-to-telomere genome apejọ ti Phaeodactylum tricornutum.bioRxiv 2021.05.04.442596;doi:https://doi.org/10.1101/2021.05.04.442596
4.Jia-Ming Song et al.Apejọ ati Afọwọsi ti Awọn Jiini Itọkasi Aafo meji fun Xian/indica Rice Ṣafihan Awọn Imọye sinu Ohun-elo Centromere Plant.bioRxiv 2020.12.24.424073;doi:https://doi.org/10.1101/2020.12.24.424073
Akoko ifiweranṣẹ: Jan-06-2022