Heatmap
ʻAe ka mea hana Heatmap i kahi faila data matrix ma ke ʻano he hoʻokomo a hiki i nā mea hoʻohana ke kānana, hoʻomaʻamaʻa a hui pū. ʻO ka hihia hoʻohana mua no nā wela wela ka hōʻiliʻili puʻupuʻu o ka pae hōʻike gene ma waena o nā laʻana like ʻole.
Hōʻike Gene
Hiki i ka Gene Annotation ke hana i ka gene annotation e pili ana i ke kaʻina o ka hoʻokomo ʻana i nā faila FASTA e pili ana i nā ʻikepili like ʻole.
Mea Hana Huli Alignment Local (BLAST)
ʻO ka mea hana BLAST he mana hoʻohui BMKCloud o NCBI BLAST a hiki ke hoʻohana ʻia e hana i nā hana like me ka hoʻohana ʻana i ka ʻikepili i hoʻoili ʻia i ka moʻokāki BMKCloud.
Manaʻo CDS_UTR
Hoʻolālā ʻia ka mea paahana CDS_UTR Prediction e wānana i nā ʻāina coding (CDS) a me nā ʻāina non-coding (UTR) i nā kaʻina transcript i hāʻawi ʻia ma muli o nā hopena BLAST e kūʻē i nā ʻikepili protein i ʻike ʻia a me nā hopena wānana ORF.
ʻĀpana Manhattan
Hiki i ka mea hana Manhattan Plot ke hōʻike i nā hoʻokolohua hoʻohālike kiʻekiʻe a hoʻohana maʻamau ʻia i nā haʻawina hui genome-wide (GWAS).
Kiʻi Circos
Hāʻawi ka mea hana CIRCOS Diagram i ka ʻike maikaʻi ʻana i ke ʻano o ka puʻunaue ʻia ʻana o ka hiʻohiʻona genomic ma waena o ka genome. Loaʻa nā hiʻohiʻona maʻamau i ka quantitative loci, SNPs, InDels, structural a me nā ʻano helu kope.
Gene Ontology (GO) Hoʻonui
Hāʻawi ka mea paahana GO Enrichment i ka loiloi hoʻonui hana. ʻO ka polokalamu mua o kēia mea hana ʻo ia ka TopGO-Bioconductor package, e komo pū ana me ka nānā ʻana i ka ʻōlelo ʻokoʻa, ka loiloi hoʻonui GO a me ka ʻike ʻana i nā hopena.
ʻIkepili Pūnaehana Hoʻohālikelike Gene Kaumaha (WGCNA)
ʻO WGCNA kahi ʻano hana eli ʻikepili i hoʻohana nui ʻia no ka ʻike ʻana i nā modules co-expression module. Pili ia i nā ʻikepili hōʻike like ʻole me ka microarray a me ka ʻikepili hōʻike gen NGS.
InterProScan
Hāʻawi ka mea hana InterProScan i ka nānā ʻana a me ka hoʻokaʻawale ʻana o ka protein protein InterPro.
GO KEGG Hoonui
Hoʻolālā ʻia ka mea paahana GO KEGG Enrichment e hana i kahi histogram hoʻonui GO, histogram hoʻonui KEGG a me ke ala hoʻonui KEGG ma muli o kahi hoʻonohonoho gene i hāʻawi ʻia a me ka hōʻike pili.