Mepu yekupisa
Chishandiso cheHeatmap chinogamuchira faira redata rematrix serinopinzwa uye chinobvumira vashandisi kusefa, kugadzirisa uye kusanganisa data. Chinhu chikuru chinoshandiswa pakushandisa heatmaps kuongorora huwandu hwemajini pakati pemasampuli akasiyana.
Chirevo cheMajini
Chishandiso cheGene Annotation chinoita ongororo yemajini zvichibva pakurongeka kwemafaira eFASTA anoiswa mufaira iri zvichienderana nemadhatabhesi akasiyana-siyana.
Chishandiso Chekutsvaga Chekutanga Chekuenderana Kwenzvimbo (BLAST)
Chishandiso cheBLAST ishanduro yakabatanidzwa yeBMKCloud yeNCBI BLAST uye inogona kushandiswa kuita mabasa akafanana uchishandisa data rakaiswa kuakhawunti yeBMKCloud.
Kufanotaura kweCDS_UTR
Chishandiso cheCDS_UTR Prediction chakagadzirirwa kufanotaura nharaunda dzekunyora makodhi (CDS) nenzvimbo dzisiri dzekunyora makodhi (UTR) muzvikamu zvakapihwa zvekunyora zvichibva pamhedzisiro yeBLAST zvichienderana nemadatabase anozivikanwa eprotein uye mhedzisiro yekufanotaura yeORF.
Plot yeManhattan
Chishandiso cheManhattan Plot chinogonesa kuratidzwa kwekuyedza kwemhando yepamusoro uye chinowanzoshandiswa muzvidzidzo zvekubatana kwe genome-wide (GWAS).
Dhizaini yeCircos
Chishandiso cheCIRCOS Diagram chinopa mufananidzo unoshanda wekuti chimiro che genomic chinoparadzirwa sei mu genome. Zvinhu zvakajairika zvinosanganisira quantitative loci, SNPs, InDels, structural uye copy number variants.
Kuwedzerwa kweGene Ontology (GO)
Chishandiso cheGO Enrichment chinopa ongororo yekuvandudza mashandiro. Software huru muchishandiso ichi iTopGO-Bioconductor package, iyo inosanganisira ongororo yekuratidza musiyano, ongororo yeGO enrichment uye kuona mhedzisiro.
Kuongororwa kweNetiweki yeWeighted Gene Co-expression Network (WGCNA)
WGCNA inzira inoshandiswa zvakanyanya pakutsvaga mamodule ekubatanidza magene. Inoshanda kune akasiyana-siyana madata ekuratidza kusanganisira microarray nedata rekuratidza magene reNGS.
InterProScan
Chishandiso cheInterProScan chinopa kuongororwa kwemaitiro emapuroteni eInterPro uye kurongwa kwawo.
Kuvandudza kweGO KEGG
Chishandiso cheGO KEGG Enrichment chakagadzirwa kugadzira GO enrichment histogram, KEGG enrichment histogram uye KEGG enrichment pathway zvichibva pane gene set yakapihwa uye tsananguro inoenderana.
