Heatmap
Matrix cov ntaub ntawv cov ntaub ntawv yog siv rau daim ntawv qhia tshav kub, uas tuaj yeem lim, normalize thiab pawg matrix cov ntaub ntawv.Nws feem ntau yog siv rau kev tshuaj xyuas pawg ntawm cov noob qhia theem ntawm cov qauv sib txawv.
Gene Annotation
Gene muaj nuj nqi annotation yog ua los ntawm daim ntawv qhia ua ntu zus hauv FASTA cov ntaub ntawv tawm tsam ntau yam ntaub ntawv.
Gene Annotation
Basic Local Alignment Search Tool
CDS_UTR_Prediction
Cov cuab yeej no yog tsim los kwv yees cov cheeb tsam coding (CDS) thiab cov cheeb tsam uas tsis yog-coding (UTR) hauv cov ntawv teev lus teev tseg raws li blasting tawm tsam cov ntaub ntawv protein paub thiab ORF twv ua ntej.
Manhattan Ploj
Manhattan zaj dab neeg ua rau pom cov ntaub ntawv nrog ntau cov ntaub ntawv cov ntsiab lus.Nws yog feem ntau siv hauv kev tshawb fawb genome-wide Association (GWAS).
Circos
CIRCOS daim duab qhia ncaj qha ntawm SNP, InDeL, SV, CNV kev faib tawm ntawm genome.
GO_Kev txhawb nqa
TopGO yog ib qho cuab yeej tsim los rau kev ua haujlwm zoo.Cov pob khoom TopGO-Bioconductor muaj qhov sib txawv ntawm kev tsom xam, GO enrichment tsom xam thiab kev pom ntawm cov txiaj ntsig.Nws yuav tsim ib daim nplaub tshev nrog cov zis hu ua "Graph", uas muaj cov txiaj ntsig rau topGO_BP, topGO_CC thiab topGO_MF.
WGCNA
WGCNA yog ib txoj kev siv dav siv cov ntaub ntawv mining rau kev tshawb pom cov noob sib koom ua ke.Nws muaj feem xyuam rau ntau yam kev qhia cov ntaub ntawv suav nrog cov ntaub ntawv microarray thiab cov ntaub ntawv qhia cov noob keeb kwm los ntawm cov tiam tom ntej sequencing.
InterProScan
InterPro Protein Sequence tsom xam thiab kev faib tawm
GO_KEGG_Enrichment
Cov cuab yeej no yog tsim los tsim kom muaj GO enrichment histogram, KEGG enrichment histogram thiab KEGG enrichment pathway raws li muab cov noob txheej thiab cov lus qhia sib xws.